Baum-Welch Blog Forward Backward Hidden Markov Model HMM machine learning Viterbi

Introduction to Hidden Markov Model

Hidden Markov Model is an Unsupervised* Machine Studying Algorithm which is part of the Graphical Models. Nevertheless Hidden Markov Model (HMM) typically educated using supervised studying technique in case coaching knowledge is out there. In this introduction to Hidden Markov Model we’ll study concerning the foundational concept, usability, intuition of the algorithmic part and a few primary examples. Only little bit of data on chance will probably be enough for anybody to understand this article absolutely.

It’s necessary to perceive the place Hidden Markov Model algorithm truly matches in or used. Briefly, HMM is a graphical model, which is usually used in predicting states (hidden) utilizing sequential knowledge like weather, text, speech and so on.

Let’s take an instance. Say, a dishonest on line casino uses two dice (assume each die has 6 sides), certainly one of them is truthful the other one is unfair. Unfair means one of many die does not have the possibilities outlined as (1/6, 1/6, 1/6, 1/6, 1/6,/ 1/6).The casino randomly rolls any one of many die at any given time.Now, assume we do not know which die was used at what time (the state is hidden). Nevertheless we all know the result of the dice (1 to 6), that’s, the sequence of throws (observations). Hidden Markov Model can use these observations and predict when the unfair die was used (hidden state).

Within the picture under,

  1. First plot exhibits the sequence of throws for both sides (1 to 6) of the die (Assume each die has 6 sides).
  2. 2nd plot is the prediction of Hidden Markov Model. Pink = Use of Unfair Die.
  3. third plot is the true (precise) knowledge. Purple = Use of Unfair Die.
  4. 4th plot exhibits the distinction between predicted and true knowledge. You’ll be able to see how properly HMM performs.
  5. Ignoring the fifth plot for now, nevertheless it exhibits the prediction confidence.

Introduction to Hidden Markov Model

Before even going by means of Hidden Markov Model, let’s attempt to get an intuition of Markov Model. Later using this concept it is going to be easier to understand HMM. Markov Model has been used to model randomly altering techniques similar to climate patterns. In Markov Model all the states are seen or observable.

An important level Markov Model establishes is that the longer term state/occasion relies upon solely on current state/event and not on another older states (This is called Markov Property). For an example, if we think about weather pattern ( sunny, wet & cloudy ) then we will say tomorrow’s climate will solely is dependent upon immediately’s weather and never on y’days climate.

Mathematically we will say, the chance of the state at time t will solely rely upon time step t-1. In different phrases, chance of s(t) given s(t-1), that is ( p(s(t) | s(t-1)) ). This is called First Order Markov Model.

In case, the chance of the state s at time t will depend on time step t-1 and t-2, it’s generally known as 2nd Order Markov Model. As you improve the dependency of previous time events the order will increase. The 2nd Order Markov Model might be written as ( p(s(t) | s(t-1), s(t-2)) ).

Ultimately, the thought is to model the joint chance, such because the chance of ( s^T = s_1, s_2, s_3 ) where s1, s2 and s3 happens sequentially. We will use the joint & conditional chance rule and write it as:

p(s_3,s_2,s_1) &= p(s_3|s_2,s_1)p(s_2,s_1)
&= p(s_3|s_2,s_1)p(s_2|s_1)p(s_1)
&= p(s_3|s_2)p(s_2|s_1)p(s_1)

Under is the diagram of a simple Markov Model as we now have defined in above equation.

Transition Chances:

The chance of one state changing to one other state is defined as Transition Chance. So in case there are 3 states (Sun, Cloud, Rain) there can be complete 9 Transition Chances.As you see within the diagram, we’ve got defined all of the Transition Chances. Transition Chance usually are denoted by ( a_ij ) which could be interpreted because the Chance of the system to transition from state i to state j at time step t+1.

a_ij = p(textual content s(t+1) = j text | textual content s(t) = i text )

For an example, within the above state diagram, the Transition Chance from Solar to Cloud is defined as ( a_12 ). Word that, the transition may occur to the same state also. This is additionally legitimate state of affairs. If we now have solar in two consecutive days then the Transition Chance from solar to sun at time step t+1 might be ( a_11 ).

Usually, the Transition Chances are outline utilizing a (M x M) matrix, referred to as Transition Chance Matrix. We will outline the Transition Chance Matrix for our above example mannequin as:

A = beginbmatrixa_11 & a_12 & a_13 a_21 & a_22 & a_23 a_31 & a_32 & a_33 finishbmatrix

As soon as necessary property to discover, when the machine transitions to one other state, the sum of all transition chances given the present state must be 1. In our instance ( a_11+a_12+a_13 ) must be equal to 1.

sum_j=1^M a_ij = 1 ; ; ; forall i

Initial Chance Distribution:

The machine/system has to start from one state. The preliminary state of Markov Model ( when time step t = zero) is denoted as ( pi ), it’s a M dimensional row vector. All the possibilities should sum to 1, that is ( sum_i=1^M pi_i = 1 ; ; ; forall i ). Throughout implementation, we will just assign the same chance to all the states. In our weather example, we will define the initial state as ( pi = [ frac13 frac13 frac13] )

Observe, in some instances we might have ( pi_i = zero ), since they cannot be the initial state.

Markov Chain:

There are primary four forms of Markov Fashions. When the system is absolutely observable and autonomous it’s referred to as as Markov Chain. What we have now discovered thus far is an example of Markov Chain. Therefore we will conclude that Markov Chain consists of following parameters:

  • A set of M states
  • A transition chance matrix A
  • An initial chance distribution ( pi )

Ultimate/Absorbing State:

When the transition chances of any step to other steps are zero apart from itself then its is aware of an Ultimate/Absorbing State.So when the system enters into the Ultimate/Absorbing State, it by no means leaves.

In Hidden Markov Model the state of the system shall be hidden (unknown), nevertheless at every time step t the system in state s(t) will emit an observable/seen symbol v(t).You possibly can see an instance of Hidden Markov Model in the under diagram.

In our preliminary instance of dishonest casino, the die rolled (truthful or unfair) is unknown or hidden. Nevertheless every time a die is rolled, we know the result (which is between 1-6), that is the observing image.


  • We will outline a specific sequence of seen/observable state/symbols as ( V^T = v(1), v(2) … v(T) )
  • We’ll define our model as ( theta ), so in any state s(t) we now have a chance of emitting a specific seen state ( v_k(t) )
  • Since we’ve got entry to only the seen states, while s(t)’s are unobservable, such a mannequin known as as Hidden Markov Model
  • Community like this are referred to as as Finite-State Machine
  • When they are associated with transition chances, they are referred to as as Markov Network

Emission Chance:

Now, let’s redefine our previous example. Assume based mostly on the weather of any day the mood of a person modifications from joyful to sad. Also assume the individual is at a remote place and we have no idea how is the climate there. We will solely know the mood of the individual. So in this case, climate is the hidden state in the mannequin and temper (pleased or sad) is the seen/observable symbol. So we should always give you the chance to predict the climate by simply figuring out the mood of the individual using HMM. If we redraw the states it might seem like this:

The observable symbols are ( v_1 , v_2 ), certainly one of which have to be emitted from every state. The chance of emitting any symbol is called Emission Chance, which are usually outlined as ( b_jk). Mathematically, the chance of emitting image okay given state j.
b_jk = p(v_k(t) | s_j(t) )

Emission chances are also defined utilizing MxC matrix, named as Emission Chance Matrix.
B = beginbmatrix
b_11 & b_12
b_21 & b_22
b_31 & b_32

Again, identical to the Transition Chances, the Emission Chances additionally sum to 1.

sum_okay=1^C b_jk = 1 ; ; ; forall j

Up to now we have now defined totally different attributes/properties of Hidden Markov Model. Prediction is the last word aim for any mannequin/algorithm. Nevertheless earlier than jumping into prediction we’d like to clear up two primary drawback in HMM.

Central Points with Hidden Markov Model:

1. Analysis Drawback:

Let’s first define the mannequin ( ( theta ) ) as following:
theta rightarrow s, v, a_ij,b_jk

Given the mannequin ( ( theta ) ) and Sequence of seen/observable symbol ( ( V^T) ), we’d like to determine the chance that a specific sequence of visible states/symbol ( ( V^T) ) that was generated from the model ( ( theta ) ).

There could possibly be many fashions ( theta_1, theta_2 … theta_n ). We’d like to discover ( p(V^T | theta_i) ), then use Bayes Rule to appropriately classify the sequence ( V^T ).

p(theta | V^T ) = fracp(V^T p(V^T)

Forward and Backward Algorithm in Hidden Markov Model

2. Studying Drawback:

Typically HMM is unsupervised studying process, where number of totally different seen symbol varieties are recognized (completely satisfied, unhappy and so forth), nevertheless the variety of hidden states usually are not recognized. The thought is to check out totally different options, nevertheless this will lead to more computation and processing time.

Therefore we frequently use training knowledge and specific number of hidden states (sun, rain, cloud and so on) to practice the mannequin for quicker and higher prediction.

Once the high-level construction (Number of Hidden & Visible States) of the model is outlined, we’d like to estimate the Transition (( a_ij)) & Emission (( b_jk)) Chances using the coaching sequences. This is called the Studying Drawback.

Derivation and implementation of Baum Welch Algorithm for Hidden Markov Model

We may even be using the evaluation drawback to remedy the Studying Drawback. So it’s essential to perceive how the Evaluation Drawback actually works. Another essential notice, Expectation Maximization (EM) algorithm might be used to estimate the Transition (( a_ij)) & Emission (( b_jk)) Chances. The Studying Drawback is is aware of as Forward-Backward Algorithm or Baum-Welch Algorithm.

three. Decoding Drawback:

Lastly, once we’ve the estimates for Transition (( a_ij)) & Emission (( b_jk)) Chances, we will then use the mannequin ( ( theta ) ) to predict the Hidden States ( W^T) which generated the Visible Sequence ( V^T ). The Decoding Drawback is also called Viterbi Algorithm.

Implement Viterbi Algorithm in Hidden Markov Model utilizing Python and R

In this Introduction to Hidden Markov Model article we went by way of a number of the intuition behind HMM. Subsequent we’ll go through each of the three drawback defined above and will attempt to construct the algorithm from scratch and in addition use both Python and R to develop them by ourself with out utilizing any library.

Listed here are the listing of all of the articles on this collection:

  1. Introduction to Hidden Markov Model
  2. Forward and Backward Algorithm in Hidden Markov Model
  3. Derivation and implementation of Baum Welch Algorithm for Hidden Markov Model
  4. Implement Viterbi Algorithm in Hidden Markov Model using Python and R